While Köhler alignment is a frequently neglected concept in microscopy, it is a critical step in configuring your microscope. This is important not only for optimal microscopic viewing, but also for even illumination of the microscope field for photomicrography. This lack of understanding has consequently also resulted in many journals accepting poor quality images. So learning to set Köhler illumination will go a long way toward preventing your images falling into this category.

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Although the microscope is probably the most commonly used biological instrument, it is frequently used improperly. The rate-limiting step to getting high quality microscopic images is illumination of your specimen. When you examine a specimen under the microscope, the intensity and distribution of light must be clear and equal to enable you to evaluate all aspects of it. Shadows and other artifacts such as a yellow sheen due to substandard illumination can only hinder this analysis.

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7) Focus the condenser: Locate the condenser adjustment  dial that moves the condenser up and down – turn it slowly until the edge of the field diaphragm appears in sharp definition against the light. As you do this, there may be a red fringe on one side, and a blue fringe on the other. Go for something in the middle.

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8) Re-open the field diaphragm: Gradually rotate the diaphragm to open it so that its edges lie just beyond the field of view. If necessary, center it using the condenser centering screws.

6) Stop down the field diaphragm: When your specimen is in focus, start to close the diaphragm by rotating it to produce the smallest diameter field of light.

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9) Adjust the substage condenser: Remove one ocular lens and look down the eyepiece tube. Turn the dial of the condenser diaphragm and you will see a polygon of light inside the dark circle formed by the eyepiece tube. Adjust the diaphragm so that the polygon occupies two thirds to three quarters the diameter of the circle.

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Getting the hang of Köhler’s method will certainly allow you to appreciate microscopy in a whole new light!  Any questions?  Let us know in the comments section below!

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10) Replace the ocular lens. The focus should now be in alignment and you will now be able to view an evenly illuminated whole microscopic field.

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Although the issue of good illumination is ignored by most routinely adjusting your microscope in this way to ensure correct alignment and produce a usable image. It is not enough to simply be able to see the image – it should be the very best that your microscope is able to produce.

There’s no single answer for this, but once you know the routine, this process takes only a minute to complete. So it’s not exactly time-consuming to routinely do this every day that you use the microscope. Even if you choose not to do it daily, however, I’d advise going through the process at times when focus is most likely to be out of alignment, such as when you:

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4) Place your slide on the microscope stage. Secure it in place using the spring-loaded slide holder. Bring the specimen into focus. See How To Focus The Light Microscope.

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Poor understanding of how to correctly set up the microscope for optimum illumination is the main obstacle for any microscopist who wants to see his specimen as well as the microscope will allow.

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Köhler (“ko-ler”) alignment is a method of illumination that was first developed in 1893 by August Köhler. He devised this to optimize the microscope’s optical system, aligning and focusing the beam of light to produce homogenously bright light.

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Polarising microscopy involves the use of polarised light to investigate the optical properties of various specimens. Although originally used predominantly in the field of geology, it has recently become more widely used in medical and biological research fields too. Polarising light microscopy is a contrast-enhancing technique to allow you to evaluate the composition and three-dimensional…

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You’re a senior postgraduate student, a post doc or a junior PI with little knowledge on microscopes and someone between Senior PI /Dean level approaches you with this: “We have now the funds to buy the fluorescence microscope someone once told me we need. Can you handle this please? Oh, by the way, the funds…